史振坤----中国科学院天津工业生物技术研究所

人才队伍

副研究员/高级工程师

史振坤

职　　称：副研究员
学　　历：博士研究生
导师类别：硕士生导师
通讯地址：天津市空港经济区西七道32号
电　　话：022-24828758
邮政编码：300308
电子邮件：zhenkun.shi@tib.cas.cn
部　　门：生物设计中心

简历

1. 教育经历

2016.09 - 2020.12，吉林大学计算机科学与技术学院，计算机应用技术，博士

2017.11 - 2019.12，The University of Queensland，Australia，医疗数据挖掘，CSC联培博士

2014.06 - 2016.09，吉林大学计算机科学与计算机学院，计算机技术，硕士

2009.09 - 2013.07，河北农业大学信息科学与技术学院，软件工程，本科

2. 工作经历

2023.11 - 今，中国科学院天津工业生物技术研究所，副研究员，硕士生导师

2020.12 - 2023.10，中国科学院天津工业生物技术研究所，博士后

研究方向

蛋白功能注释、酶促反应机制机理解析、生信软件开发、高性能计算、人工智能生物学、数据挖掘、人工智能

获奖及荣誉

2017，社会化搜索技术与软件. 中国工商业联合会，二等奖.

代表成果

1. Zhenkun Shi,Dehang Wang,Yang Li,Rui Deng,Jiawei Lin,Cui Liu,Haoran Li,Ruoyu Wang,Muqiang Zhao,Zhitao Mao,Qianqian Yuan,Xiaoping Liao✉,Hongwu Ma✉. REME: an integrated platform for reaction enzyme mining and evaluation [J]. Nucleic Acids Research (2024):gkae405. (SCI 一区,IF:16.6)

2. Zhenkun Shi,Rui Deng,Qianqian Yuan,Zhitao Mao,Ruoyu Wang,Haoran Li,Xiaoping Liao*,Hongwu Ma*. Enzyme Commission Number Prediction and Benchmarking with Hierarchical Dual-core Multitask Learning Framework[J]. Research,2023. (SCI 一区,IF:11.04).

3. Zhenkun Shi,Sen Wang,Lin Yue,Yijia Zhang*,Binod Kumar Adhikari,Shuai Xue,Wanli Zuo,Xue Li. Dual-Core Mutual Learning Between Scoring Systems and Clinical Features for ICU Mortality Prediction[J]. Information Sciences,2023: 118984. (CCF推荐B类期刊,SCI 一区,IF:8.23).

4. Zhenkun Shi,Pi Liu,Xiaoping Liao,Zhitao Mao,Jianqi Zhang,Qinhong Wang,Jibin Sun,Hongwu Ma,Yanhe Ma. Data-driven synthetic cell factories development for industrial biomanufacturing [J]. BioDesign Research,2022.

5. Shining Liang,Wanli Zuo, Zhenkun Shi*,Sen Wang,Junhu Wang,Xianglin Zuo. A multi-level neural network for implicit causality detection in web texts [J]. Neurocomputing,2022,481: 121-132. (CCF推荐C类期刊， SCI 二区,WOS:000761785300011,IF:5.78 ).

6. Yijia Zhang,Wanli Zuo, Zhenkun Shi*,Binod Kumar Adhikari. Journal of Ambient Intelligence and Humanized Computing [J].,2022: 1-21. (SCI 二区，WOS:000760720900001,IF:3.66).

7. Yi Yang,Yufeng Mao,Ruoyu Wang,Haoran Li,Ye Liu,Haijiao Cheng, Zhenkun Shi,Yu Wang,Meng Wang,Ping Zheng,Xiaoping Liao,Hongwu Ma. AutoESD: a web tool for automatic editing sequence design for genetic manipulation of microorganisms [J]. Nucleic Acids Research,2022,50(W1):W75-W82. (SCI 1区,WOS:000805210700001,IF:19.16)

8. Zhenkun Shi,Sen Wang,Lin Yue,Lixin Pang,Xianglin Zuo,Wanli Zuo*,Xue Li. Deep dynamic imputation of clinical time series for mortality prediction[J]. Information Sciences,2021,579: 607-622 (CCF推荐B类期刊,SCI 一区， WOS:000701122700013,IF:8.23).

9. Zhenkun Shi,Wanli Zuo,Shining Liang,Xianglin Zuo*,Lin Yue,Xue Li. IDDSAM: An Integrated Disease Diagnosis and Severity Assessment Model for Intensive Care Units [J]. IEEE Access,2020,15423-15435:1-1. (SCI 二区,IF: 4.098,WOS: 000524741300012).

10. Yijia Zhang, Zhenkun Shi*,Wanli Zuo,Lin Yue,Shining Liang,Xue Li. Joint Personalized Markov Chains with Social Network Embedding for Cold-Start Recommendation[J]. Neurocomputing,2020,386: 208-220. (SCI 二区,IF: 4.072)

11. Suresh Pokharel, Zhenkun Shi*.,Guido Zuccon,& Yu Li. (2020,November). Discriminative Features Generation for Mortality Prediction in ICU. In International Conference on Advanced Data Mining and Applications (pp. 324-338). Foshan,Cham (CCF推荐C类会议,WOS: 000723588900025).

12. Zhenkun Shi,Wanli Zuo,Weitong Chen,Lin Yue,Yuwei Hao,Shining Liang*. DMMAM: Deep Multi-Source Multi-Task Attention Model for Intensive Care Unit Diagnosis [C]. Lecture Notes In International Conference on Database Systems for Advanced Applications,53-69. Springer,Cham,2019. (SCI 会议,SCI检索号：WOS:000485172700004,CCF推荐B类会议).

13. Zhenkun Shi,Weitong Chen,Shining Liang,Wanli Zuo*,Lin Yue,Sen Wang. Deep Interpretable Mortality Model for Intensive Care Unit Risk Prediction [C]. International Conference on Advanced Data Mining and Applications. Springer,Dalian,2019: 617-631. (CCF推荐C类会议,WOS: 000582483200045).