论文

1. Peng J, Li X, Li Y, Zhu X, Wang Y*, Sun Z*, Zhang X*. Design and construction of a novel transcription factor-based glycine biosensor for directed enzyme evolution in Escherichia coli. Biosensors & Bioelectronics, 2026. 300, 118478.

2. Sun Z*, Huang G, Zhang Y, Wang S*, Kashlev M*. Nascent RNA profiling reveals regulation of gene transcription through productive reiterative initiation in bacteria. Nucleic Acids Research, 2025. 53(22):gkaf1353.

3. Huang Y, Ma K, Li Y, Li Q, Lu F, Zhang X*, Sun Z*. Engineering T7 RNA polymerase-cascaded systems controlled by nisin and theophylline for protein overexpression and targeted gene mutagenesis in Lactococcus lactis. Synthetic and Systems Biotechnology, 2025. 10, 1150-1159.

4. Song Y, Liu Y, Li Q, Chen L*, Sun Z*, Zhang, X*. A Tn5 transposase-based system for high-efficiency genome-wide gene activation in Escherichia coli. ACS Synthetic Biology, 2025. 14, 2753-2763.

5. Ma K, Huang Y, Li M, Li Y, Fan F,Sun Z*, Zhang X*. Development of highly sensitive and specific and genetically encoded biosensors for calcifediol and calcitriol detection. ACS Sensors, 2025. 10, 3725-3736.

6. Zhang K, Li M, Wang J, Huang G, Ma K, Peng J, Lin H, Zhang C, Wang H*, Zhan T*, Sun Z*, Zhang X*. Optimizing enzyme properties to enhance dihydroxyacetone production via methylglyoxal biosensor development. Microbial Cell Factories, 2024. 23:163.

7. Sun Z, Yakhnin AV, FitzGerald PC, Mclntosh CE, Kashlev M*. Nascent RNA sequencing identifies a widespread sigma70 dependent pausing regulated by Gre factors in bacteria. Nature Communications, 2021. 12: 906.

8. Sun Z, Cagliero C, Izard J, Chen Y, Zhou YN, Heinz WF, Schneider TD and Jin DJ*. Density of σ70 promoter-like sites in the intergenic regions dictates the redistribution of RNA polymerase during osmotic stress in Escherichia coli. Nucleic Acids Research, 2019. 47(8): 3970-3985.

9. Martin CM, Sun Z, Zhou YN and Jin DJ*. Extrachromosomal nucleolus-like compartmentalization by a plasmid-borne ribosomal RNA operon and its role in nucleoid compaction. Frontiers in Microbiology, 2018. 9: 1115.

10. Martin CM, Cagliero C, Sun Z, Chen D, and Jin DJ*. Imaging of transcription and replication in the bacterial chromosome with multicolor Three-Dimensional Superresolution Structured Illumination Microscopy. Methods in Molecular Biology, 2018. 1837: 117-129.

11. Li J^#, Wang C^#, Yang G, Sun Z, Guo H, Shao K, Gu Y, Jiang W* and Zhang P*. Molecular mechanism of environmental d-xylose perception by a XylFII-LytS complex in bacteria. PNAS, 2017. 114(31): 8235-8240.

12. Jin DJ*, Martin CM, Sun Z, Cagliero C and Zhou YN. Nucleolus-like compartmentalization of the transcription machinery in fast-growing bacterial cells. Critical Reviews in Biochemistry and Molecular Biology, 2016. 52(1): 96-106.

13. Sun Z, Chen Y, Yang C, Yang S, Gu Y* and Jiang W*. A novel three-component system-based regulatory model for d-xylose sensing and transport in Clostridium beijerinckii. Molecular Microbiology, 2015. 95(4): 576-589.

14. Gu Y^#, Ding Y^#, Ren C, Sun Z, Rodionov DA, Zhang W, Yang S, Yang C* and Jiang W*. Reconstruction of xylose utilization pathway and regulons in Firmicutes. BMC Genomics, 2011. 11: 255.

专利：

1. 张学礼，孙喆，彭佳妮。一种甘氨酸生物传感器及其构建方法。中国，202511017458.2。

2. 张学礼，孙喆，宋宇灵。一种基于 Tn5 转座酶的基因组水平转录激活系统及其应用。中国，2025106018435。

3. 张学礼，孙喆，马康。一种骨化二醇和骨化三醇的特异性生物传感器及其应用。中国，2025104682722。

4. 张学礼，孙喆，宋宇灵，黄国中。一种启动子随机文库的构建、高通量测序与转录强度分析方法。中国，202410615719X。

5. 张学礼，孙喆，张凯博，黄国中。一种在体内检测甲基乙二醛的生物传感器及其应用。中国，2024106160563。

6. 顾阳，肖晗，姜卫红，宁媛媛，李治林，蒋宇，孙喆，杨晟。一种提高丙酮丁醇梭菌在混合糖发酵中糖利用率的方法。中国，ZL201210163123.8。